Technology
Introduction
Features
CBS retained Big-data
Specimen & clinical info.:
144,411
(7 cancer types)
Experimental data:
3,300,275
(7 cancer types)
Public data:
158,098,078
(7 cancer types)
Standard transcriptomics gene expression atlas:
4 cancers
HCC (2), HNSCC (1), BC (1)
Expanding to other cancers
Retained genomic data by cancer types
| Type of cancer | Assay platform | No. of Target gene | Retained data |
|---|---|---|---|
| HCC | RT-PCR | 1,200 | 2,381,904 |
| nCounter | 770 | 138,600 | |
| MS | 2,085 | 2,085 | |
| MS/MS | 1,429 | 1,429 | |
| RC | nCounter | 770 | 120,120 |
| GC | NGS (DNA seq.) | On process | On process |
| FACS / Bioplex | On process | On process | |
| SCLC | NGS (DNA seq.) | 62 | 744 |
| HNSCC | NGS (DNA seq.) | 244 | 46,360 |
| nCounter | 99 | 9,603 | |
| PSC | NGS (DNA seq.) | On process | On process |
| TNBC | NGS (DNA seq.) | 27,685 | 599,430 |
| 34,344 | 3,300,275 | ||
Uniformized database for public data
| Database | Types of data | No. of Data |
|---|---|---|
| DNA | 504 cell line related DNA sequence data | 1,159,663 |
| 504cell line related 24 drug response data | 11,670 | |
| RNA | 60 liver cancer specimen DNA sequence data | 60,000 |
| 59 breat cancer specimen DNA sequence data | 30,000 | |
| Protein | Amino acid sequence and function data | 550,000 |
| Protein matching data (protein name) | 130,000,000 | |
| PPI Info. | rotein protein information | 2,500,0000 |
| Signal pathway Info. | 320 signal transduction pathway data | 1,145,020 |
| Drug Info. | Drug data | 9,588 |
| Drug details (Target gene, regulatory approval etc.) | 132,137 | |
| 158,098,078 | ||
Standard cancer transcriptomics gene expression atlas by cancer types
